FastQCFastQC Report
Fri 17 Mar 2023
EGAF00005010549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70905148
Sequences flagged as poor quality0
Sequence length30-100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAATAGAGGACAACAACTCCTT12025781.696037641723842No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAATAGAGGACAACAACTCCT5713220.8057553169482137No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATAG3249520.4582911243623665No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATAGAGGA1175970.16585114525111772No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATAA1139800.16074996416339193No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATAGAGGACAAC935390.13192130986032213No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATAGAGGAC829200.11694496427819318No Hit
AGTCGGAGGGCCAAGCGGTCTTAGGAAGACAATAGAGGACAACAACTCCT806810.11378722458910881No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATAGAG770680.10869168484071141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)