FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1158012
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCATTT10100.0040854147.23455521
CCCGGCT13702.176305E-46.93355561
CTTTAAA14958.518724E-56.8425831
AAAGTTA10700.0079692346.75310135
CTCCGGA13059.4727345E-46.71898941
CAAAGAA28653.601599E-106.6310441
CCAAAAA15751.6818833E-46.4950231
CTTCAAG15900.0086325715.51464221
CTTTTTT36902.0274456E-85.3465131
Produced by FastQC (version 0.11.5)