FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences888503
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGCG3700.001296658113.5578641
AGATCTC4600.006770174510.8733276
CCCACAT6400.00731666348.9578751
GTTCAAT6600.0094141448.6864241
ATTGGAT7900.00452106738.1402486
CAACAAT9900.0040605677.2386861
TATTCCT11350.00204511696.92498877
GATAAAT13250.00140150186.49023341
TTATCAT12550.0058598646.26283849
CTTCAAA15250.00696737275.62255436
AGCAGAT17600.00556677775.2932891
Produced by FastQC (version 0.11.5)