FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences879172
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTTAT5351.2650172E-412.0206951
CTCCGAT7950.0047832558.0893981
CTTCGAT8200.00631701577.84277061
GTTCAAT8200.00631701577.84277061
ACAATTT12056.259572E-57.66908653
CTTGTTT11553.0235166E-47.42403651
AATTTTG15001.663835E-57.1086535
CCAGCAT10550.00774021776.7731141
ATCCAGA13350.00157619786.4230431
GATTGAT12300.00474986676.39040571
ATTCAAT14300.00340951055.99633741
CAATTTT14350.00375617275.9445184
CTTTCAT18703.2495134E-45.7317931
CATCAAA16950.00369761675.48042871
CAAAAAC15700.009592795.46163231
AAGATAA18750.00221893985.3077945
Produced by FastQC (version 0.11.5)