FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences884222
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGAC1450.001281753624.8111171
CTCAGAT4350.0042392711.5785211
CTCCGAG4450.005022641711.3183311
CTTTAAA14257.2759576E-1210.6034881
GAACTAC4850.00964986510.3660689
CTATTCC7400.00235095368.7509491
ACATTTA9101.8168366E-48.6832594
CCCAGAT8306.872304E-48.6689441
CTTTGAT15007.906309E-46.23586131
TTTTTAC16303.2697045E-46.1694626
CTTCAAT14550.00382961855.93420551
CTTCAAA15550.0079991915.55258461
CTTTGAA15750.009207185.48207571
TCAATAT17300.0044220545.3979483
CTTTTTT34101.5733167E-75.2750911
Produced by FastQC (version 0.11.5)