FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1465457
Sequences flagged as poor quality0
Sequence length100-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGCC700.001109728841.0190627
CCCTGGT5950.0038356149.6895641
CTTTAAC7350.00218090028.8244241
CTTGAAC13653.623889E-67.91935441
CTCCAAT10700.00100118737.40866761
CTCATAT10350.0059291066.962911
CTTGTAT12708.1418024E-46.8093981
AATCCAG14354.761548E-46.5032445
CCCAGAT13300.0097950645.9603561
CCCGGAT19357.2019E-55.95895621
CCAGATT17709.290393E-45.68709372
ATTCATT16800.00315824315.5546656
CTCAAAA15650.0084463215.52583741
ATTTATG15600.0085146575.52179676
Produced by FastQC (version 0.11.5)