FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences776212
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCAAG5752.1666274E-411.3448641
CCCAAAT5850.0031763839.9119421
CTCATTT7750.00334241268.4171571
CTTTTGG8900.00127660098.1439411
CCTAATT2404.073792E-47.235581100-104
CTTCAAG10100.0044160227.17634341
CTCCTGC12355.534409E-47.04269551
CTTCAAT11550.00211413326.90295931
CTTTAAA11550.00211413326.90295931
CTTTTAT15101.0771712E-46.72009941
CTCAAAA10800.0084551476.71121071
CTTCAAA15700.0081988525.5399541
AGATTTT15750.0086985385.5102654
CAAAAAT18700.0098931545.0387911
Produced by FastQC (version 0.11.5)