FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2350297
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAATT14300.00296568316.0727381
CTCCGGA25001.486279E-55.49987651
CTCCGCT17300.00406227635.4379681
CTTCAAT32301.4393536E-65.15305381
CTATGAA24303.173456E-45.0626981
CTTTAAT30151.183729E-55.0404731
Produced by FastQC (version 0.11.5)