FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3211394
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCTAAT7700.0035322768.367461
ACTTAAC14105.503394E-57.0752976
CCCGGTT22853.917852E-65.95263531
GATTGCG22854.237527E-65.9252027
GTCAAAT29402.7434544E-75.60044341
ATTTAGT17350.0050421255.3392426
CTATCAC18150.0080974115.1275351
CAACGAT28202.4140023E-55.07718231
CACCGAT31104.7002814E-65.0641221
CTCAATT21350.00187792485.0296211
Produced by FastQC (version 0.11.5)