FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2130143
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAACTG5950.00378247379.7063071
CACGGAG10900.00119750827.2852951
CCCGAAT10150.0048262497.11237961
CCCGGAC15852.9085424E-56.83192351
CTCCGAT17351.01814236E-46.24126771
CTCAAAT18502.450572E-45.85329631
CTTAAAT22401.5727013E-55.8010351
CCAGGAT17507.6436833E-45.77525231
CTTTGAT39153.4906407E-95.34745651
TTAAATC27201.2049679E-55.28432852
TTCGATT20500.00103892615.2585512
CCCAAAA24052.820999E-45.1028741
Produced by FastQC (version 0.11.5)