FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488160
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCCAG2800.00296494715.5384631
CATTCGC3200.007672523613.4652474
CTCCAAG3300.00882025813.1841511
CAAATTG5852.7657382E-411.04840853
CTTTTCT12750.0059132996.25600861
CAAAGAA12950.0069505456.15939041
Produced by FastQC (version 0.11.5)