FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2075270
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTCAG6500.00749477748.9326691
TCACACA10500.00666434276.87970974
CTAAAAA17651.1972497E-46.16809651
CACAAAT15359.4267033E-46.14666561
CCCGTCC17255.9400126E-45.8903831
GTTCTAT15700.0080968365.54735851
CCCGGAG26152.9953753E-55.2733491
CCTCCAC22706.379056E-45.11562541
GCGATTT18400.0085450265.1036983
CTTTCGT20150.00421887735.0426361
Produced by FastQC (version 0.11.5)