FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1335701
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGAG3300.00886691613.1760291
CACTAAT4856.6640053E-411.953511
CTTTAGC8306.4058695E-48.7311031
CTCCACG10155.3686026E-47.85369251
CTCCGTT13200.00118466286.58801461
CTTCGAT13500.0015273816.4416141
CCAAAGG12400.00446760336.42862651
ACAATTC13750.00193957136.3064975
CTTTGAT21951.597602E-66.27287051
ACGATTT16453.3993807E-46.1515653
CAACAAA22752.945244E-66.05228571
CCTTCAT19658.299576E-55.90071541
CTTTAAT21304.2688644E-55.7838441
CTTCAAC15450.0068922725.6285951
CTTCAAG16900.00302719285.57447341
CAAATTT19755.8309775E-45.48968743
AAATTTT32601.7644234E-65.09938054
CTTTGAA24553.612117E-45.0181621
Produced by FastQC (version 0.11.5)