FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1007104
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGTAGC6500.001669445110.7102145
TCAACCT7602.3485607E-510.4689833
CTTCGAT11753.6432626E-58.0097551
CTCAAAA15051.6374288E-67.6965711
CTCCGAT8550.0081722777.62061741
AGAATCC12204.932015E-47.1145393
CTCTTTA12305.3597806E-47.06301071
CTATGAT12200.00380675986.5274961
AAGGCAG12800.00634098156.21564965
ATCTTGT13300.0094289345.98197846
AAAGGCA17005.1369984E-45.9566834
GTAAAAG15150.0056061955.7343261
TAAAAAC20107.307054E-45.39784672
GGTGCCC3600.0065390885.2223610-14
Produced by FastQC (version 0.11.5)