FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005011939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005011939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1317985
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACACGT4750.00888997710.4820948
CTCAAAT11252.522428E-58.2490231
CTCAAAA16801.3541212E-67.2235611
CAAAGAG18104.3647506E-66.70474151
CTCCGAT10750.009373986.64053731
CTTCCAT20103.250112E-66.3927561
CAACAAT15800.00162517425.87351371
AATGTCA15450.0084523035.5253825
CCTCCAT15600.0090491895.4912141
CCTTGAT18200.0014483665.4912141
TCCATCC18200.0088940875.08581643
CTTCCAG23953.1278923E-45.0670491
Produced by FastQC (version 0.11.5)