FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1388018
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGTAT7150.00168359739.0791118
CTTTGGG10054.919087E-47.91805031
CTTGAAT12250.0040066956.49603271
CTTCTAT15108.0364005E-46.2281351
GTTTCAT17501.1123104E-46.2007591
CCCAGAT13050.00773811256.09780841
GTCATGG14250.00286020486.0919741
AATTTAA17801.4627009E-46.07824375
CTTTCAT23455.0771596E-65.8614141
CCCGGAT17350.00421587245.4204521
ATTTAAT19450.0029312575.1917686
CTTGAAA22656.4669107E-45.1102651
CGGAATC18500.0092401235.0692193
Produced by FastQC (version 0.11.5)