FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545000
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTACCG2500.00146690617.2649298
CCCATTT6606.787862E-510.9095841
CTTCAAT10408.375582E-69.0004081
CTATTAT9954.6335495E-47.9601591
CATTGAT11100.00148766847.1354581
CTCTTTT14356.011832E-57.02470831
CTTTCAT12200.0040212446.4920971
CTTTTTT21804.005504E-45.28464271
Produced by FastQC (version 0.11.5)