FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2093192
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTCTC9854.1142217E-48.0513611
TGAGTGC8500.0083211577.6060058
CTCCTGA16307.187209E-77.51924371
CTCATGA9650.00298634297.4711161
CCCAAAT21252.3646862E-97.46408561
CTCTGAT13653.0717165E-57.394491
CCCAAAC16205.2616524E-67.120621
CTTCTCG16607.5617772E-66.94903851
CCCAGAA16708.266508E-66.9074281
CACCAAT24204.4237822E-96.8521251
CCCCAAT14951.0167369E-46.751491
CTCATAT15701.9235889E-46.4289671
CCCATCC16856.926421E-56.4180661
CTTCTGT32854.3655746E-116.36466361
CTCCTAT13850.00216086956.24660831
CTCTATG15209.0745057E-46.16612861
CTTTAAA33304.0017767E-106.0621491
CTCAAAT15600.001240226.00802231
CCTGTAT18051.7829504E-45.991381
CTCCATT25405.4425254E-75.9607161
Produced by FastQC (version 0.11.5)