FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1242552
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTCC8300.0065382857.81322241
CAAATTC13352.4760702E-57.5150023
CTTTCAG18155.178081E-77.14597751
CTCCGCT12406.208272E-46.9730911
CTCGGCT10850.009366246.64103941
CAAAGAC14250.00298950476.0678131
CGCAGAC15300.00700838035.62001136
CTCAAAA15600.0081646865.54271361
CTTCCGC21102.5045592E-45.4639071
AAATTCT19300.00288826835.1977824
AAGTTTT18300.008802955.09025674
ATTTCAT22707.051401E-45.07878541
CAAGAAA24253.2751242E-45.05129771
AAAGATT20050.0046440145.00335174
Produced by FastQC (version 0.11.5)