FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1150005
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGCGAG5850.00350700419.7947895
TACCTGG6400.00734922768.9534399
CTCGGCT6500.0081538698.8406811
CCCAGAA8155.8315916E-48.8135611
CCCAATT8450.0078921847.6505891
CCCAAAT9800.00359684887.32964561
CTCTTCT13250.00136600346.50540641
AAGATTA14907.712966E-46.24910835
CTTCAAT18051.8720725E-45.96929551
CCTGCAT21100.00153289795.1064361
Produced by FastQC (version 0.11.5)