FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences721204
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTAAG900.003740175232.0216671
CACACGT2101.6613485E-523.959647
ACACGTC2353.9616578E-521.410748
CACGTCT2608.624896E-519.3520159
AGCACAC3850.001709620713.0688945
CTCAGAT3950.00203681812.7681321
GCACACG4150.003003312.1241546
CACGATA4450.004971186611.333511
GAGCACA4450.005059435511.3067964
AGAGCAC4700.00759773610.705373
TCGTTCT5750.002950252510.0005453
GTTTTAC9450.0024434017.62420651
AACATTT12650.0059790676.2503413
CATCAAT12900.0071485046.1436921
TTTTTAC15700.0089849355.49393036
Produced by FastQC (version 0.11.5)