FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences757130
Sequences flagged as poor quality0
Sequence length100-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAAGTCG3150.006586077613.7809544
CCCACAT4550.00551331811.17727851
CCCATAT7702.9457477E-49.4353651
GTTTGAT11350.00171465957.04119251
CTTCCAT14858.393798E-56.84937521
GATTTTG16202.749627E-46.25246955
CTTTCAT18101.6610113E-46.02090931
CTTTCTC15350.0062277045.67965941
GGATTTT17900.0060650865.25447034
AATTTCT18100.00690765265.19640975
AATATTC19650.00319892035.1547085
CAGGCGA4100.0042129995.043505140-144
Produced by FastQC (version 0.11.5)