FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1106244
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGGAG6250.00611432979.1562121
CGGCGTA8150.0061960657.8600655
GAAGCGC8500.009026277.53641467
CTCAAAG9600.00306198967.4513451
GGTGAAT11904.2116764E-47.21340231
CTTCGAT11100.00159825837.0888471
CGTTGAT10250.00579661046.9788211
CTTTTAT23903.9999577E-96.883921
CTTCAGA10450.0069900086.8452551
CCCGAAG12400.00511368746.34566161
CTTCAGC14550.00408978065.89962151
CTTCGGC17056.1501696E-45.873671
CTTCAAA20753.4886478E-55.86052751
CTTTCAT22255.890503E-45.14393951
CAATATA19600.00380265325.0843194
Produced by FastQC (version 0.11.5)