FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences694893
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAGACT2750.002753939715.7128831
CAACGTT2800.003196162415.3656684
TCTTAAG4350.0080295813.3731165145
CCCGCAT5259.855271E-512.3458371
CTCCAAT4350.004209152411.58900451
CTCAAAT6500.0079754788.8636771
CTGGAAT8407.667004E-48.5734971
CTGAAAT10307.306403E-58.3903741
TCAAATA9050.00164633477.9364992
CTTGAAG10055.1527313E-47.8824991
CTTCAAT10659.575314E-47.43841461
AATATTA13800.00219915046.23534355
GAGTTAA3600.0070456875.9755384
ATTTTGA17608.4445387E-45.72865531
Produced by FastQC (version 0.11.5)