FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences805087
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCTAT3200.00841379213.2801591
CTAAAGG4400.00519152911.2680141
CTTATTG7804.0941715E-59.9531235
CTCAAAG6457.7441934E-49.8829091
CTTTAAT11152.52694E-79.5283651
CTCATTT7553.1217118E-49.3811271
ATAGTCA7603.456076E-49.2864074
CTCCCAT7703.8019853E-49.1983791
CTCCATT8801.4713453E-48.8534391
ATTTGCG7650.00378081958.303146
CTCATAA7850.00462078548.1203521
CAGATTT13203.0190695E-68.0200793
TCCCGTT8450.0091896627.52078252
TTAATAT10650.00118768987.2896123
CTTCAAC10100.0055271977.0126251
AGATTTT16356.110531E-56.47492554
CTTTAAA14305.362886E-46.4388651
TTATTGT12250.00517853026.3374996
CAATGAT12600.0066892566.1833541
CTTTTGT15350.00126110255.99842171
Produced by FastQC (version 0.11.5)