FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486127
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTTTGC4908.106685E-411.6749066
CTTTCGG6355.88337E-410.1811881
CAAGAAT6550.00866358458.773611
CTGAAAG8750.00117717448.2095921
AAAGAAT12658.449606E-46.7848393
Produced by FastQC (version 0.11.5)