FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences913960
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTACAC3406.712955E-414.7909691
CCTCGAA5800.0031845279.9092211
CTTCGAA6600.0092245398.7081031
GTTCTGG9950.00416279867.22028641
CTTCCAA10000.004371087.1841851
GTTTCAG10300.00582568446.9749371
AACTTTC10600.0080295436.74755
GTTCCAG12200.0041240686.4775441
CTGTAAT12400.00488686476.37306741
CTTTATT16855.00015E-45.9690561
CTGCCGG19756.3197303E-45.4563431
Produced by FastQC (version 0.11.5)