FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1631141
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTACAC10650.00104359187.3799658
CTATCCT10100.00488759867.10292631
CTTCGAG10550.0074580366.7999581
CCCCAAA14304.6006852E-46.52177761
CTTTCGA14857.2697044E-46.28023051
ATTCAAC16453.9459986E-46.08097656
CCCAAAG18101.9802255E-45.9452671
CCTCAAA14800.00479061445.81672051
CTTCAAA29956.29916E-85.74874541
TAGATTT16750.00322138525.5454873
ATAGATT18400.00161469095.44436932
GATTTGC19550.0035168235.11672975
Produced by FastQC (version 0.11.5)