FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1515265
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTAGA3950.002379595512.5079091
GGTAACC7402.2951903E-510.4916731
GGTGTTC18251.8189894E-129.2817991
GGTGACT6100.0055926679.2564391
GGTAAAA17054.0017767E-119.10714151
CACGTCT7050.00184076128.9906339
CAAATTA7700.00408917678.2322264
GGTAGTT7850.004773448.0920151
GGTATAT10601.2941618E-47.99022871
GGTATTT16551.5669502E-77.67641261
GGTAATT9250.00242806837.6303081
TCAAATT15756.000864E-77.6046162
GGTGTTT12157.5925345E-57.5518071
GGTGAAT13101.9232144E-47.0041561
GGTGTAA10400.0076007146.78657251
GGTACAG13853.8005787E-46.62487031
ATTGGAT12400.00588277456.26116041
GGTGAGC18053.545876E-56.256431
GGTGAAG30605.620677E-106.22767831
AAAGTAA17409.7295013E-45.66650965
Produced by FastQC (version 0.11.5)