FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005012986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005012986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536984
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTCGCA2700.00242410516.0153147
AAGATCT4450.004944276511.3409083
CTTTAAG4750.00780731710.6653781
TTTAAGA6950.00130248349.3361432
AAGATTG6200.00537491879.2992145
CCTGAAT6250.0055471239.2636421
CTTTAAT8150.00532671587.99202251
CTTAAAA8300.0062742797.8475891
Produced by FastQC (version 0.11.5)