FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1445502
Sequences flagged as poor quality0
Sequence length100-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATTT16252.8349282E-46.23885061
AGAACTG15100.00563004475.73255874
TCTTGCA15400.00699851065.6208857
GTTTTTA20257.957824E-45.36409141
CTTCTGG17700.0052702655.3186331
ATCTTGA20358.953655E-45.3170546
TTCTTGC22255.239088E-45.1872146
CGATGTC21100.00145033775.1280594
GGAATAC18450.0089604315.0826615
Produced by FastQC (version 0.11.5)