FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1217000
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC3951.0404312E-515.6784228
CACACGT4151.6607559E-514.9228337
CACGTCT4806.533534E-512.9020349
GCACACG7553.169882E-610.9377226
AGCACAC7755.4119393E-48.8799135
AGATCCG8158.933034E-48.4437426
CTTCAGT7700.00490674338.067021
AGAGCAC8200.0088258727.55551433
AAGAGCA14550.00624892075.67862132
Produced by FastQC (version 0.11.5)