FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1139666
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCATGG8559.6439454E-48.3787011
CCAAGAT8050.00523403578.0092061
CCCGGAA16751.4913167E-77.69841
CGAAAGG10100.0052044987.0567633
TTTACCA14154.3700892E-46.54893978
CTTCGGG14254.48154E-46.5353871
CAAATTT14807.5450283E-46.26049333
CCTTGAT16102.8890316E-46.2293821
AAATTTT20755.598704E-66.1827454
CACAAAA16250.0021776345.73103141
CTTCTGT16350.00234256645.6959791
Produced by FastQC (version 0.11.5)