FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1562414
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACACG7600.00290744878.5490151
CTTATGG10050.00438080087.18325231
CTTCAAG24403.645073E-86.50908661
CTTCAGA16806.5225315E-56.44568631
CCCGGAT18052.5486712E-56.3992631
CCCGCTT13700.00188272176.32335951
CTTTGAT24001.8312676E-76.3167731
GGAATTA13000.00791428056.0846784
TCTGGCA16050.00179711895.82447247
CTCCACG18400.00144355745.4928461
CTTTGAA23703.8725637E-55.4829131
TTCAAGG23251.7655278E-45.26533752
Produced by FastQC (version 0.11.5)