FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1327833
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTGGG5300.00139969910.9398061
CTCCGGG10651.0040031E-48.1663341
CTACAAG11001.4621076E-47.9064961
CCCTTAG2300.00210145986.908751510-14
CTCCGAT10500.0064506626.9024971
CCCAAAG12000.00316644186.64365241
CTCCAAA14203.72828E-46.63514661
CAAGTAT13250.0088839276.0168931
GTTCAAT13250.0088839276.0168931
CTCCGGA15900.0094444865.46990251
TATTCCA19050.00222046235.3080847
CTCCGCC18100.0067800325.2054741
CTTTTAT29306.8445497E-65.1945411
CTTTAAT19550.00294260225.1901121
GATAATC22556.091441E-45.1319652
TCAAAGA22756.89758E-45.08684872
CTTCCGC20000.0039084385.0733351
Produced by FastQC (version 0.11.5)