FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621338
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCAAT4604.723043E-412.4507591
CCCAAAT4050.00257690312.3739021
CTTTAAA4450.00521111311.2616411
CTATTTT7100.00168772379.0750261
ACGATAT7100.00184775128.985183
AGAAGTT8600.00113298928.242224
ATAATAA8800.00142207828.0548963
CTTGAAA8950.00152301887.99909071
ATTTGAT8500.008559327.58031461
TCAAAAT9650.00352230257.3442168
CTCCTCC10700.0087009636.69082831
CTTTTCC17900.00685476475.1994091
Produced by FastQC (version 0.11.5)