FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1318019
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTTAGT1900.006148612618.9368861
CACGAAA10004.9348257E-47.9156191
CTCAGAT9200.00190298067.82175731
GTTAAAG8400.0073658057.71001861
CTTTTGT18759.0794674E-76.90817641
CTCCGGG12200.004057086.48821261
CAAAGAG16353.3276662E-46.16172741
CTCAAAG13250.00956415.97405151
TTTATGG15000.0055980835.735417
CTTCAAT18500.0095094765.05666071
Produced by FastQC (version 0.11.5)