FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences994596
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCGAT6506.631765E-410.0516531
CATTACG6250.00565635049.2431437
CCTGGAC7300.00191676388.9501021
CATAGAC6500.00747437458.9348021
CCCTTGT6700.00957984858.6680921
GCTTGAT9950.0037608967.29600671
CCTCCAT10250.00502245557.08246471
CATTTGC13401.9147526E-47.00599965
CCTTGAT11450.00189834156.97421741
ATTATGC10550.00699364536.8447456
AAATAGT11850.00288149186.7032296
CCTGTAT10850.0087122036.6908091
CTTCAAT15501.4856689E-46.5569921
CTCCATT13350.00131885176.52541731
TCAATCT12250.00407143036.4856523
CTTTTAT18300.00125396995.55373671
Produced by FastQC (version 0.11.5)