FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences936795
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGAT4150.002833377612.2193851
CTCTAAT4350.00402951511.6575741
TGAGATG5700.002676690210.1192054
CTCAGAA6658.334988E-49.8043821
CTCTCAT6400.00669477239.0554371
CTCCGTC8851.2250454E-49.0042761
CCCTTGT6500.0076030778.9161221
CTTTAAT14358.626921E-88.5821561
CTTTGAC11552.5819364E-47.5265971
CTTTAAA16404.4421653E-56.625931
CTTTGAT16052.3998485E-46.31905941
CTTCCTT15700.00126160315.9985061
CGTGGGT2900.00361127665.966905670-74
CTTTCAA14600.00368889335.95426031
CTTTCCG17809.0577704E-45.69780351
CATCAAT18050.00108139245.6188861
CTCTTTT21452.9292118E-45.4037111
Produced by FastQC (version 0.11.5)