FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3627081
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCCCT6455.52232E-511.1370521
CTTAGAC6550.0086860758.7736161
CTCACAT14751.3647477E-67.792161
CCCACAA23805.638867E-117.54558661
CCTAAAT20457.41602E-87.0253281
GTCTAAT13150.00125529286.55519251
CTCAAGG15752.1032504E-46.38524251
CTCACGA13800.00216279276.24643331
CTCAACT16102.795228E-46.24643331
CTCCAAT34953.6379788E-116.16600661
CTCTGAT26803.9197403E-86.16485641
CTAAACA14100.00275276726.113531
CCCTTAT24201.5519599E-65.93669271
CTCAATT29053.2321623E-85.93464951
CTTTGAT66900.05.9056341
CTCCCAG26852.6341513E-75.88583851
CCCAAAT31805.9189915E-95.87321851
CCCGTGA16050.00182203165.81832841
CTCTTGG18652.9278873E-45.77753161
CTTCGAA26151.0023887E-65.76869441
Produced by FastQC (version 0.11.5)