FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences919317
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCCTTG6100.0057576269.2230892
CTTCGAC6950.00160318039.1273481
ATATTAC8157.2787364E-48.6191086
CCTCAAT8100.0063996547.83148961
CGATTAT8300.0079615217.642781
CCTCCAC11302.7522843E-47.48496341
GTTGGAA9550.00336060637.3804611
CCAAAAT11600.00297016076.68377161
TCGATAT12550.00692820186.1626953
Produced by FastQC (version 0.11.5)