FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1478156
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTACAT6850.00111169649.5016271
TTTGATC8600.0090382117.5356332
CATTCAC10900.00123409897.26431945
TATTCAC11250.00172487257.0383185
AACATAC10750.00865227456.6960746
CTCCATT15309.457733E-46.1446621
CTTTTGA20051.7454544E-56.13169571
CTCGCGG14550.0036237525.96436641
GTTTGAT13350.0098219195.95878171
CCCGCTT13350.0098219195.95878171
GATAAGG17950.00666444145.21323877
Produced by FastQC (version 0.11.5)