FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences770521
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTAAAG3504.0849096E-516.6064781
GTTCGAC4856.517062E-411.9840561
CCCAGAA6505.309798E-511.1774371
ACGCCCT5902.7971494E-411.0366423
CTCAAGC5750.002699799410.1082911
CTCAAAG8104.5059372E-59.8665031
CTCCGGG8900.00124695658.1632971
CTTTAAT12508.555566E-68.1371741
CCAAAAC8700.0092424867.51586251
CTTCAAT13750.00182226946.3406551
TCAAAGA14200.00273952546.1145942
CTTTCAA13400.0097179215.964081
CAAAGAA19959.9303164E-55.82683371
CTCTTTT17959.7055483E-45.6665561
Produced by FastQC (version 0.11.5)