FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1125740
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAATT6204.2723684E-410.5433711
CTCTATT8155.220302E-48.9119161
CTTCAGT7450.0022956648.774351
CTTGTAT9753.4004144E-48.1943921
CTCATTC8100.0048885978.0702341
CTTCGAT13001.4533505E-57.82192041
CTCCGAT9400.0021451397.72682141
CTCCTTT23704.0017767E-117.6616161
CTCATTT10658.758626E-47.50190831
TTTACCT14608.929072E-67.4306917
CTTTAAT13201.4832796E-47.15316251
CTTCTCG10200.00476686427.12079571
CTCTTTT25651.7698767E-96.79598761
CTTTGCT16153.4630422E-56.7460171
CTTATGA10850.0086717656.69420431
ATTTACC13500.00156113926.4289246
TCCTTTC20353.2051066E-66.3979012
CATCAAT20453.245048E-66.3930471
CGCCTAA2550.0060678686.2432237120-124
CTTTCAC13050.00742109356.12224671
Produced by FastQC (version 0.11.5)