FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3895544
Sequences flagged as poor quality0
Sequence length100-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGGCCC4850.00930076910.419219
CCCCGAT15503.007699E-88.4657521
CTCACAT15051.2287503E-57.26573321
CTCAGCT20554.6465902E-76.7401021
CCCACAT19851.8828196E-66.61053661
CCCAAAC14604.8782388E-46.4910541
CCCAGTT22753.9375664E-76.4087491
CTCAATT29152.5458576E-86.0020191
CTCAAAG36457.4578566E-115.9999611
CTTAAAC24851.9140734E-65.8671651
CTCCAAC25002.1300148E-65.8319621
CTTCTAT66800.05.67481371
CTCTGAT28656.955979E-75.59786941
CCCGCAT23703.322705E-55.53667261
CTTAAAT57150.05.48500351
CTTCAGT25301.6067694E-55.47466751
CTCACCC17400.00398977855.44651651
CTTCCAT68750.05.40781971
CTCAAAT39252.928573E-95.3862071
CCTTAAT27159.111107E-65.3701311
Produced by FastQC (version 0.11.5)