FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1267957
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGGG3100.0059830713.9832041
CCCCTAT5650.002447230510.2296011
CCACTGG5950.00375657139.7138221
GTCCCCA5950.00375657139.7138221
CAAAGTG10256.1611686E-47.75328871
CCCGATT9600.00277915977.5256831
CTACAAC10400.00606256546.94678351
CAACCGT12556.909362E-46.90803671
CGAACAA12350.00442179576.43491551
CCCTGCT16100.00176306295.8335731
CCAAAAA17500.00473792665.3668871
CAATATT22255.46295E-45.17169764
Produced by FastQC (version 0.11.5)