FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1249204
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCGAT11452.7183622E-58.1998451
TTAAACT9000.00151882418.0027722
CCCGAAT8350.0067586987.7843761
CTCCAAG9500.00251652447.6022861
CTAAAAT12909.48571E-46.71829941
CCCGCCT10850.0091604036.6563791
CATCAGT12400.00462867926.4067651
CTTCAAT20804.6975892E-66.2499561
CCCGGAG13300.0095768195.97322461
GTTTCAT18250.00129400765.5402961
GTTTTAT19000.0021502775.32160041
Produced by FastQC (version 0.11.5)