FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1882348
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAATT9051.5349998E-48.8205071
CTCTAAT7600.0027740388.5936651
CTTTGAT34200.07.85100171
CTCAAGG13904.252466E-67.83115771
CTTTAAT29900.07.7665521
CTCCATT22701.0113581E-97.3527781
GGTAAGG10250.0050453277.0798761
CTCCCGT11400.00182176097.0022451
CTCCGTA12657.194927E-46.883991
CTCCCGG18454.55969E-66.6865491
CTCCGAT14354.175093E-46.57417061
CCCAAAG13300.00127101366.54755351
CTCCAAG13350.00132612426.52303171
CTTTAAA29055.857146E-106.49496361
GTCTCTT12300.0040483736.4898861
CTCAAGA12700.00565202446.285481
CCCTGAT16252.7600903E-46.25207471
CTCAAAT17601.1532441E-46.18483451
CCCGCTT16553.4948112E-46.13874441
CCTTCAT25204.154099E-76.0473941
Produced by FastQC (version 0.11.5)