FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545387
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACACGT1950.0082358317.9991367
AGCCCCA4102.1067039E-413.698166
CCTCTAC3100.007075863413.6314421
CCCGGAT6205.6650006E-410.2235811
GCATCTT6150.0062445069.1312694
CTTCAAA7950.00544163727.97310731
CTTTTTT18050.00154098265.4626461
Produced by FastQC (version 0.11.5)