FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1423959
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAATT7750.00370527648.3226151
AGCTATT9900.0042735737.20146234
CCACGCT10450.0068673976.8580821
CTTCGAT13150.0092266035.99495461
TGAATGT15600.00141716955.94120653
CTTCAAT21706.7085995E-55.6144621
TTTGATT24551.4053709E-55.5176992
TTGATTG15650.0095074175.4666693
TTAAATT17150.0043675675.40424632
CAACAAA24607.842554E-55.2439231
AATACCT17850.00699348565.19176777
CAAAAAT29459.208381E-65.1103771
TGATTGA18350.0096395525.0508354
Produced by FastQC (version 0.11.5)